Introduction
This report provides a summary of the performance of kcat value extraction, retrieval, and prediction for the specified metabolic model. It presents statistics on kcat values successfully retrieved, whether experimental or predicted.
The output file, containing the full list of kcat values associated with each reaction, are available as a tab-separated file (TSV) at the default output path: output/model_name_kcat_full.
Model Overview
e_coli_core
Model ID
95
Reactions
72
Metabolites
137
Genes
Coverage
The coverage section reports the number of kcat values retrieved for the model and the number of reactions that have at least one associated kcat value, whether experimental or predicted. This provides a measure of how extensively the model’s reactions are annotated with kinetic data.
Higher coverage indicates that a larger fraction of reactions are constrained by kcat values, improving the accuracy and reliability of enzyme-constrained simulations.
| Reactions with EC information with at least one kcat values | 48 (100.0%) |
|
| Reactions in the model with at least one kcat values | 48 (50.5%) |
|
| kcat values retrieved | 190 (96.4%) |
|
kcat Distribution
